Package: ASmiR 0.1.1

ASmiR: Prediction of Abiotic Stress-Specific miRNAs in Plants

Provides functions for predicting plant microRNAs (miRNAs) associated with cold, drought, heat, and salt stress using the ASmiR machine learning framework. Implements PseKNC feature generation and stress-specific support vector machine models described by Pradhan et al. (2023), "ASmiR: a machine learning framework for prediction of abiotic stress-specific miRNAs in plants", Functional & Integrative Genomics, 23(2), article 92, <doi:10.1007/s10142-023-01014-2>.

Authors:Upendra Kumar Pradhan [aut, cre], Prabina Kumar Meher [aut]

ASmiR_0.1.1.tar.gz
ASmiR_0.1.1.zip(r-4.7-any)ASmiR_0.1.1.zip(r-4.6-any)ASmiR_0.1.1.zip(r-4.5-any)
ASmiR_0.1.1.tgz(r-4.6-any)
ASmiR_0.1.1.tar.gz(r-4.7-any)ASmiR_0.1.1.tar.gz(r-4.6-any)
ASmiR_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ASmiR/json (API)

# Install 'ASmiR' in R:
install.packages('ASmiR', repos = c('https://ukpradhan.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.70 score 6 exports 11 dependencies

Last updated from:f77b53f1a9. Checks:7 OK, 1 FAIL, 1 NOTE. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK141
source / vignettesOK189
linux-releaseOK134
macos-releaseOK196
macos-oldrelFAIL22
windows-develOK103
windows-releaseOK98
windows-oldrelNOTE102
wasm-releaseOK87

Exports:asmir_check_pythonasmir_featuresasmir_model_filesasmir_predictasmir_read_fastaasmir_validate_sequences

Dependencies:BiocGenericsBiostringsclasscrayone1071genericsIRangesproxyS4VectorsSeqinfoXVector